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Sample GSM1320662 Query DataSets for GSM1320662
Status Public on Feb 04, 2014
Title genomic DNA from CD8+ T-cells Purified WBC subtype (Tc2637)
Sample type genomic
Source name CD8+ T-cells Purified WBC subtype Tc2637
Organism Homo sapiens
Characteristics sample type: Purified WBC subtype
disease state: normal
sample subtype: CD8+ T-cells
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Tc2637
CD8+ T-cells Purified WBC subtype Tc2637
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.04646451
foxp3DMR1in 0.964545
foxp3DMRpro 0.788075
cg00071250 0.05109324
cg00226923 0.9630276
cg00431549 0.06840222
cg00491404 0.7026792
cg00546897 0.9696873
cg00554250 0.1044394
cg00620024 0.1445686
cg00673191 0.8433004
cg00739120 0.4036604
cg00795812 0.05594424
cg00899659 0.4280314
cg01031251 0.9607084
cg01124420 0.3462604
cg01182697 0.6921
cg01278291 0.9048277
cg01344171 0.8408997
cg01441777 0.9443202

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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