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Sample GSM1320657 Query DataSets for GSM1320657
Status Public on Feb 04, 2014
Title genomic DNA from CD8+ NK cells Purified WBC subtype (NK8p2620)
Sample type genomic
Source name CD8+ NK cells Purified WBC subtype NK8p2620
Organism Homo sapiens
Characteristics sample type: Purified WBC subtype
disease state: normal
sample subtype: CD8+ NK cells
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description NK8p2620
CD8+ NK cells Purified WBC subtype NK8p2620
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.08709705
foxp3DMR1in 0.9620449
foxp3DMRpro 0.8335122
cg00071250 0.02455557
cg00226923 0.9614398
cg00431549 0.02680393
cg00491404 0.2477352
cg00546897 0.9634159
cg00554250 0.1747138
cg00620024 0.8297711
cg00673191 0.7653406
cg00739120 0.3922492
cg00795812 0.7014912
cg00899659 0.8085621
cg01031251 0.9584111
cg01124420 0.3902206
cg01182697 0.5596073
cg01278291 0.810189
cg01344171 0.8264827
cg01441777 0.7623266

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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