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Sample GSM1320652 Query DataSets for GSM1320652
Status Public on Feb 04, 2014
Title genomic DNA from EDTA, o/n at room temp Human whole blood (3082EDTARt)
Sample type genomic
Source name EDTA, o/n at room temp Human whole blood 3082EDTARt
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDTA, o/n at room temp
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3082EDTARt
EDTA, o/n at room temp Human whole blood 3082EDTARt
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9424877
foxp3DMR1in 0.9670109
foxp3DMRpro 0.9110748
cg00071250 0.5260809
cg00226923 0.9658477
cg00431549 0.04857791
cg00491404 0.8031601
cg00546897 0.7325531
cg00554250 0.1172211
cg00620024 0.6602532
cg00673191 0.3888901
cg00739120 0.2830966
cg00795812 0.9216679
cg00899659 0.342784
cg01031251 0.8922236
cg01124420 0.511224
cg01182697 0.2683479
cg01278291 0.5014197
cg01344171 0.6343909
cg01441777 0.5411945

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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