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Sample GSM1320648 Query DataSets for GSM1320648
Status Public on Feb 04, 2014
Title genomic DNA from EDTA, Fresh Human whole blood (3159EDTAFr)
Sample type genomic
Source name EDTA, Fresh Human whole blood 3159EDTAFr
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDTA, Fresh
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3159EDTAFr
EDTA, Fresh Human whole blood 3159EDTAFr
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9512712
foxp3DMR1in 0.9683186
foxp3DMRpro 0.9282103
cg00071250 0.6906624
cg00226923 0.9545825
cg00431549 0.05510106
cg00491404 0.8302872
cg00546897 0.7621922
cg00554250 0.09912917
cg00620024 0.7398819
cg00673191 0.4129705
cg00739120 0.2357121
cg00795812 0.9389799
cg00899659 0.2443168
cg01031251 0.8798901
cg01124420 0.6057596
cg01182697 0.186674
cg01278291 0.3633991
cg01344171 0.5199487
cg01441777 0.5608478

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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