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Sample GSM1320646 Query DataSets for GSM1320646
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, o/n at 4C Human whole blood (3021Cit4C)
Sample type genomic
Source name Citrate, o/n at 4C Human whole blood 3021Cit4C
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, o/n at 4C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3021Cit4C
Citrate, o/n at 4C Human whole blood 3021Cit4C
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9109046
foxp3DMR1in 0.9606714
foxp3DMRpro 0.8549173
cg00071250 0.3860286
cg00226923 0.9451222
cg00431549 0.05125563
cg00491404 0.7535402
cg00546897 0.6685734
cg00554250 0.1396058
cg00620024 0.6484545
cg00673191 0.4855126
cg00739120 0.4889889
cg00795812 0.8611
cg00899659 0.4296997
cg01031251 0.8924532
cg01124420 0.4593377
cg01182697 0.3695932
cg01278291 0.5373702
cg01344171 0.7061509
cg01441777 0.549175

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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