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Sample GSM1320642 Query DataSets for GSM1320642
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, o/n at 4C Human whole blood (3082Cit4C)
Sample type genomic
Source name Citrate, o/n at 4C Human whole blood 3082Cit4C
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, o/n at 4C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3082Cit4C
Citrate, o/n at 4C Human whole blood 3082Cit4C
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9502797
foxp3DMR1in 0.9678525
foxp3DMRpro 0.8610248
cg00071250 0.6091176
cg00226923 0.952603
cg00431549 0.05395693
cg00491404 0.8241938
cg00546897 0.71321
cg00554250 0.1021287
cg00620024 0.676226
cg00673191 0.4281663
cg00739120 0.3292229
cg00795812 0.9248866
cg00899659 0.3023407
cg01031251 0.8914433
cg01124420 0.5216624
cg01182697 0.2088263
cg01278291 0.5121918
cg01344171 0.5886508
cg01441777 0.4825499

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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