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Sample GSM1313407 Query DataSets for GSM1313407
Status Public on Jan 22, 2017
Title RNF125 mutated individual OGS21
Sample type genomic
 
Source name RNF125 mutated individual
Organism Homo sapiens
Characteristics gender: Male
genotype: RNF125 mutation
health state: Diseased donor
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
 
Submission date Jan 23, 2014
Last update date Jan 22, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE54335 A new syndrome of overgrowth, macrocephaly, hypoglycemia, enlarged ventricles, mild, and moderate intellectual disability and recurrent inflammatory disease is due to mutations in RNF125

Data table header descriptions
ID_REF
VALUE Average Beta
OGS21.Intensity
OGS21.Signal_A
OGS21.Signal_B
OGS21.Detection Pval

Data table
ID_REF VALUE OGS21.Intensity OGS21.Signal_A OGS21.Signal_B OGS21.Detection Pval
cg00000029 0.5559937 4972 2152 2820 0.00
cg00000108 0.9292968 7778 457 7321 0.00
cg00000109 0.8364231 4485 650 3835 0.00
cg00000165 0.1793029 5466 4468 998 0.00
cg00000236 0.6695652 6225 1990 4235 0.00
cg00000289 0.661868 2748 863 1885 0.00
cg00000292 0.8192586 10960 1899 9061 0.00
cg00000321 0.2011958 9935 7916 2019 0.00
cg00000363 0.2973233 13387 9377 4010 0.00
cg00000622 0.02214082 18463 18052 411 0.00
cg00000658 0.7630616 12207 2816 9391 0.00
cg00000714 0.1889811 23024 18654 4370 0.00
cg00000721 0.8762958 5688 616 5072 0.00
cg00000734 0.08564484 13888 12690 1198 0.00
cg00000769 0.09209064 11595 10518 1077 0.00
cg00000807 0.772285 16548 3691 12857 0.00
cg00000884 0.7917801 3939 741 3198 0.00
cg00000905 0.06344199 5606 5244 362 0.00
cg00000924 0.4597065 18166 9769 8397 0.00
cg00000948 0.8595321 12337 1647 10690 0.00

Total number of rows: 485577

Table truncated, full table size 19799 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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