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Sample GSM1313406 Query DataSets for GSM1313406
Status Public on Jan 22, 2017
Title RNF125 mutated individual OGS836
Sample type genomic
 
Source name RNF125 mutated individual
Organism Homo sapiens
Characteristics gender: Male
genotype: RNF125 mutation
health state: Diseased donor
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
 
Submission date Jan 23, 2014
Last update date Jan 22, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE54335 A new syndrome of overgrowth, macrocephaly, hypoglycemia, enlarged ventricles, mild, and moderate intellectual disability and recurrent inflammatory disease is due to mutations in RNF125

Data table header descriptions
ID_REF
VALUE Average Beta
OGS836.Intensity
OGS836.Signal_A
OGS836.Signal_B
OGS836.Detection Pval

Data table
ID_REF VALUE OGS836.Intensity OGS836.Signal_A OGS836.Signal_B OGS836.Detection Pval
cg00000029 0.5588357 4744 2037 2707 0.00
cg00000108 0.9105416 8172 640 7532 0.00
cg00000109 0.8514692 4256 547 3709 0.00
cg00000165 0.1937743 5040 4044 996 0.00
cg00000236 0.7290159 5428 1398 4030 0.00
cg00000289 0.6627377 2530 787 1743 0.00
cg00000292 0.8254899 11332 1895 9437 0.00
cg00000321 0.2162416 9468 7399 2069 0.00
cg00000363 0.3222631 11583 7818 3765 0.00
cg00000622 0.02380413 17544 17124 420 0.00
cg00000658 0.7631987 12155 2802 9353 0.00
cg00000714 0.2032261 23086 18374 4712 0.00
cg00000721 0.9109589 5594 407 5187 0.00
cg00000734 0.09378788 13100 11862 1238 0.00
cg00000769 0.09029831 11063 10055 1008 0.00
cg00000807 0.8003699 15038 2922 12116 0.00
cg00000884 0.8129813 4445 750 3695 0.00
cg00000905 0.1061093 5498 4904 594 0.00
cg00000924 0.5149343 17477 8426 9051 0.00
cg00000948 0.8328431 11458 1832 9626 0.00

Total number of rows: 485577

Table truncated, full table size 19752 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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