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Sample GSM1313405 Query DataSets for GSM1313405
Status Public on Jan 22, 2017
Title RNF125 mutated individual OGS837
Sample type genomic
 
Source name RNF125 mutated individual
Organism Homo sapiens
Characteristics gender: Female
genotype: RNF125 mutation
health state: Diseased donor
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
 
Submission date Jan 23, 2014
Last update date Jan 22, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE54335 A new syndrome of overgrowth, macrocephaly, hypoglycemia, enlarged ventricles, mild, and moderate intellectual disability and recurrent inflammatory disease is due to mutations in RNF125

Data table header descriptions
ID_REF
VALUE Average Beta
OGS837.Intensity
OGS837.Signal_A
OGS837.Signal_B
OGS837.Detection Pval

Data table
ID_REF VALUE OGS837.Intensity OGS837.Signal_A OGS837.Signal_B OGS837.Detection Pval
cg00000029 0.5302106 4981 2287 2694 0.00
cg00000108 0.9230973 7442 480 6962 0.00
cg00000109 0.8859403 3819 347 3472 0.00
cg00000165 0.2324094 4590 3500 1090 0.00
cg00000236 0.7002203 4440 1261 3179 0.00
cg00000289 0.6322949 2179 738 1441 0.00
cg00000292 0.8251727 9601 1596 8005 0.00
cg00000321 0.3066112 9505 6560 2945 0.00
cg00000363 0.3027962 10128 7031 3097 0.00
cg00000622 0.02287076 16690 16306 384 0.00
cg00000658 0.7478492 10826 2655 8171 0.00
cg00000714 0.1748493 19637 16186 3451 0.00
cg00000721 0.8891377 4365 395 3970 0.00
cg00000734 0.08424199 12281 11238 1043 0.00
cg00000769 0.0854676 10208 9327 881 0.00
cg00000807 0.7973499 13786 2714 11072 0.00
cg00000884 0.7686968 4366 933 3433 0.00
cg00000905 0.08746029 5251 4783 468 0.00
cg00000924 0.5194479 14246 6794 7452 0.00
cg00000948 0.8253555 11432 1914 9518 0.00

Total number of rows: 485577

Table truncated, full table size 19674 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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