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Sample GSM1313404 Query DataSets for GSM1313404
Status Public on Jan 22, 2017
Title RNF125 mutated individual OGS009
Sample type genomic
 
Source name RNF125 mutated individual
Organism Homo sapiens
Characteristics gender: Male
genotype: RNF125 mutation
health state: Diseased donor
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
 
Submission date Jan 23, 2014
Last update date Jan 22, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE54335 A new syndrome of overgrowth, macrocephaly, hypoglycemia, enlarged ventricles, mild, and moderate intellectual disability and recurrent inflammatory disease is due to mutations in RNF125

Data table header descriptions
ID_REF
VALUE Average Beta
OGS009.Intensity
OGS009.Signal_A
OGS009.Signal_B
OGS009.Detection Pval

Data table
ID_REF VALUE OGS009.Intensity OGS009.Signal_A OGS009.Signal_B OGS009.Detection Pval
cg00000029 0.484208 4111 2072 2039 0.00
cg00000108 0.9181319 7180 496 6684 0.00
cg00000109 0.8121325 3131 507 2624 0.00
cg00000165 0.1960828 4393 3512 881 0.00
cg00000236 0.6858912 5067 1523 3544 0.00
cg00000289 0.6348962 2502 850 1652 0.00
cg00000292 0.7749568 9156 1983 7173 0.00
cg00000321 0.2321278 9412 7204 2208 0.00
cg00000363 0.2967325 11193 7842 3351 0.00
cg00000622 0.02472629 16158 15756 402 0.00
cg00000658 0.7351693 10503 2708 7795 0.00
cg00000714 0.167231 21164 17608 3556 0.00
cg00000721 0.8879623 4577 424 4153 0.00
cg00000734 0.07300254 12516 11595 921 0.00
cg00000769 0.07320771 9134 8458 676 0.00
cg00000807 0.745239 13815 3445 10370 0.00
cg00000884 0.7653764 3672 785 2887 0.00
cg00000905 0.08546223 5341 4876 465 0.00
cg00000924 0.4660705 15108 8020 7088 0.00
cg00000948 0.820066 9598 1645 7953 0.00

Total number of rows: 485577

Table truncated, full table size 19625 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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