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Sample GSM1304915 Query DataSets for GSM1304915
Status Public on Jan 11, 2014
Title schiz_hip_5
Sample type RNA
 
Source name hippocampus, schizophrenia
Organism Homo sapiens
Characteristics age: 37
gender: M
race: B
pmi: 5.98
ph: 6.07
rin: 6.4
tissue: hippocampus
disease state: schizophrenia
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Five (5) ug of fragmented, biotin-labeled cDNA was hybridized to Affymetrix Human Genome U133_Plus 2 Gene Chips for 18 hours, then washed/stained according to manufacturer's recommendations using the Affymetrix 450 fluidics station.
Scan protocol Gene chips were scanned using an Affymetrix 3000 array scanner.
Data processing R/Bioconductor was used to apply the Robust Multi-Array Average (RMA) methodology to generate expression values. Brain regions were normalized separately.
 
Submission date Jan 10, 2014
Last update date Jan 11, 2014
Contact name Thomas A Lanz
E-mail(s) thomas.a.lanz@pfizer.com
Phone 860-441-3551
Organization name Pfizer
Department Global Pathology and Investigative Toxicology
Street address Eastern Point Rd MS# 8274-1224
City Groton
State/province CT
ZIP/Postal code 06340
Country USA
 
Platform ID GPL570
Series (1)
GSE53987 Microarray profiling of PFC, HPC and STR from subjects with schizophrenia, bipolar, MDD or control

Data table header descriptions
ID_REF
VALUE RMA expression values

Data table
ID_REF VALUE
1007_s_at 1277.57
1053_at 48
117_at 22.09
121_at 163.74
1255_g_at 27.7
1294_at 67.76
1316_at 190.19
1320_at 13.8
1405_i_at 9.17
1431_at 14.52
1438_at 37.78
1487_at 149.19
1494_f_at 39.74
1552256_a_at 255.2
1552257_a_at 209.45
1552258_at 10.3
1552261_at 16.38
1552263_at 7.78
1552264_a_at 66.64
1552266_at 8.86

Total number of rows: 54675

Table truncated, full table size 899 Kbytes.




Supplementary file Size Download File type/resource
GSM1304915_5_SCZ_HPC.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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