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Sample GSM1303697 Query DataSets for GSM1303697
Status Public on Dec 30, 2014
Title m12_gr_l1 RNA-Seq (I)
Sample type SRA
Source name 12 month Granulocytes
Organism Mus musculus
Characteristics cell type: Murine bone marrow derived primary Granulocytes
cell surface marker: Gr1+
strain: C57BL/6
Treatment protocol PolyA selection
Growth protocol FACS sorted primary mouse Granulocytes
Extracted molecule total RNA
Extraction protocol Extract RNA using Qiagen Rneasy Micro kit.
Tru-Seq RNA sample prep kit
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
Description m12_gr_l1
technical replicate of biological replicate 1
Data processing RUM to make alignments; Customized script to count fragments on gene; DESEQ to do differential expression test;
Genome_build: mm9
Supplementary_files_format_and_content: Tab separated text file for gene's count and fpkm for each sample
Submission date Jan 09, 2014
Last update date May 15, 2019
Contact name deqiang sun
Phone (713) 677-7439
Organization name Texas A&M University
Street address 2121 W Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platform ID GPL13112
Series (2)
GSE53928 Long Non-coding RNAs Control Hematopoietic Stem Cell (HSC) Function (RNA-Seq)
GSE63277 Long Non-coding RNAs Control Hematopoietic Stem Cell (HSC) Function
BioSample SAMN02580191
SRA SRX423997

Supplementary file Size Download File type/resource
GSM1303697_m12_gr_l1.tsv.gz 1.0 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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