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Sample GSM1290689 Query DataSets for GSM1290689
Status Public on Mar 14, 2014
Title Adoptive transfer of OT-I derived T cells transduced with shRNA into B16 tumor bearing mice_6-sp1
Sample type RNA
 
Source name CD8 T cells isolated from spleen
Organism Mus musculus
Characteristics cell type: CD8 T cells
transduction: shRNA targeting Alk
tissue: spleen
sample name: 6-sp1
Extracted molecule total RNA
Extraction protocol Trizol, per manufacturers protocol
Label Biotin
Label protocol One cycle amplification by standard Affymetrix procedure
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description CD8 T cells isolated from spleen; transduced with shRNA targeting: Alk; Sample name: 6-sp1
Adoptive transfer of OT-I derived T cells transduced with shRNA into B16 tumor bearing mice.
Data processing JMP Genomics
Background correction: RMA; Transformation: log2; Normalization: median scaling; Summary method: median
 
Submission date Dec 17, 2013
Last update date Mar 14, 2014
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL1261
Series (1)
GSE53388 Immunotherapy Targets in Tumors

Data table header descriptions
ID_REF
VALUE log2 signal

Data table
ID_REF VALUE
1415670_at 4.61035156
1415671_at 4.42480469
1415672_at 4.91503906
1415673_at 4.69628906
1415674_a_at 4.87011719
1415675_at 4.90332031
1415676_a_at 6.37792969
1415677_at 3.48339844
1415678_at 5.92675781
1415679_at 5.52246094
1415680_at 4.69042969
1415681_at 4.75488281
1415682_at 3.62988281
1415683_at 5.43457031
1415684_at 2.38964844
1415685_at 3.12011719
1415686_at 4.59863281
1415687_a_at 6.08691406
1415688_at 4.99707031
1415689_s_at 2.12988281

Total number of rows: 45101

Table truncated, full table size 981 Kbytes.




Supplementary file Size Download File type/resource
GSM1290689_NUID-0000-0160-0949.cel.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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