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Sample GSM1290684 Query DataSets for GSM1290684
Status Public on Mar 14, 2014
Title Adoptive transfer of OT-I derived T cells transduced with shRNA into B16 tumor bearing mice_4-sp2
Sample type RNA
 
Source name CD8 T cells isolated from spleen
Organism Mus musculus
Characteristics cell type: CD8 T cells
transduction: shRNA targeting Ptpn2
tissue: spleen
sample name: 4-sp2
Extracted molecule total RNA
Extraction protocol Trizol, per manufacturers protocol
Label Biotin
Label protocol One cycle amplification by standard Affymetrix procedure
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description CD8 T cells isolated from spleen; transduced with shRNA targeting: Ptpn2; Sample name: 4-sp2
Adoptive transfer of OT-I derived T cells transduced with shRNA into B16 tumor bearing mice.
Data processing JMP Genomics
Background correction: RMA; Transformation: log2; Normalization: median scaling; Summary method: median
 
Submission date Dec 17, 2013
Last update date Mar 14, 2014
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL1261
Series (1)
GSE53388 Immunotherapy Targets in Tumors

Data table header descriptions
ID_REF
VALUE log2 signal

Data table
ID_REF VALUE
1415670_at 4.25097656
1415671_at 4.74707031
1415672_at 4.46191406
1415673_at 4.09667969
1415674_a_at 4.35449219
1415675_at 4.29785156
1415676_a_at 5.87792969
1415677_at 3.38378906
1415678_at 5.63964844
1415679_at 5.53808594
1415680_at 4.59863281
1415681_at 4.58300781
1415682_at 3.64550781
1415683_at 5.26855469
1415684_at 2.65527344
1415685_at 3.11035156
1415686_at 4.33496094
1415687_a_at 5.80761719
1415688_at 4.76269531
1415689_s_at 1.54101563

Total number of rows: 45101

Table truncated, full table size 981 Kbytes.




Supplementary file Size Download File type/resource
GSM1290684_NUID-0000-0160-0944.cel.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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