|
| Status |
Public on Dec 04, 2015 |
| Title |
zfs1dd1_2 |
| Sample type |
SRA |
| |
|
| Source name |
Yeast
|
| Organism |
Candida albicans |
| Characteristics |
genotype/variation: zfs1 deletion
|
| Treatment protocol |
No treatment
|
| Growth protocol |
Cultures were grown to mid-log phase in YPD at 30˚C
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were prepared according to Illumina's instructions
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
RNA-seq from polyA+_RNA
|
| Data processing |
Data were obtained using the Illumina Genome Analyzer CASAVA 1.8 Pipeline
ELAND was used to map mRNA-Seq reads to the whole genome reference assembly.
EpiCenter (Huang et al., 2011) was used to determine RPKM values and to identify differentially expressed genes between groups
Supplementary_files_format_and_content: tab-delimited text file including RPKM values for each sample
|
| |
|
| Submission date |
Dec 06, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Melissa Wells |
| E-mail(s) |
wellsme@niehs.nih.gov
|
| Phone |
919-541-7867
|
| Organization name |
NIEHS
|
| Department |
LST
|
| Street address |
111 TW Alexander Drive
|
| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27103 |
| Country |
USA |
| |
|
| Platform ID |
GPL15149 |
| Series (1) |
| GSE53073 |
RNA Seq in wild type and zfs1 deficient C. albicans |
|
| Relations |
| BioSample |
SAMN02437669 |
| SRA |
SRX388197 |
