|
Status |
Public on Jun 04, 2015 |
Title |
R496(CytoScanHD_Array) |
Sample type |
genomic |
|
|
Source name |
Cervical cancer biopsy
|
Organism |
Homo sapiens |
Characteristics |
sample group: Case age (years): 52 histology: SCC tumor stage: IIIB
|
Treatment protocol |
None
|
Growth protocol |
None
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA extraction was performed according to the manufacturer's instructions.
|
Label |
Biotin
|
Label protocol |
Biotinylated DNA were prepared according to the standard Affymetrix protocol from 500 ng total DNA (Cytoscan HD Technical Manual, Affymetrix).
|
|
|
Hybridization protocol |
Following fragmentation, ssDNA were hybridized for 18 hr at 50C and 60 rpm on Cytoscan HD Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol
|
Scan protocol |
Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
|
Description |
Copy Number data from Cervical cancer biopsy
|
Data processing |
Microarrays were normalized with the Chromosome Analysis Suite (ChAS) Software version 2.0 and compared with the Reference data set included in ChAS.
|
|
|
Submission date |
Dec 02, 2013 |
Last update date |
Jun 04, 2015 |
Contact name |
INGRID MEDINA MARTINEZ |
E-mail(s) |
fiemed@hotmail.com
|
Organization name |
HOSPITAL GENERAL DE MEXICO OD
|
Department |
MEDICINA GENOMICA
|
Lab |
MEDICINA GENOMICA
|
Street address |
DR. BALMIS 148
|
City |
MEXICO CITY |
State/province |
CUAUHTEMOC |
ZIP/Postal code |
06726 |
Country |
Mexico |
|
|
Platform ID |
GPL16131 |
Series (2) |
GSE52902 |
Impact of Gene Dosage on Gene Expression, Biological Processes and Survival in Cervical Cancer: a Genome-Wide Follow-Up Study [CytoScanHD_Array] |
GSE52904 |
Impact of Gene Dosage on Gene Expression, Biological Processes and Survival in Cervical Cancer: a Genome-Wide Follow-Up Study |
|