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Sample GSM1272142 Query DataSets for GSM1272142
Status Public on Mar 03, 2015
Title genomic DNA from peripheral blood, subject affected by Down syndrome, 1019
Sample type genomic
 
Source name peripheral whole blood, subject 1019
Organism Homo sapiens
Characteristics group: subject affected by Down syndrome (DS)
disease state: Down syndrome
family: 19
gender: Male
age: 33
tissue: peripheral whole blood
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from peripheral whole blood using the QIAamp 96 DNA Blood Kit (QIAGEN)
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing GenomeStudio (2010.3) Methylation module (1.8.5) software
raw_data.txt includes Unmethylated and methylated signal intensities
 
Submission date Nov 20, 2013
Last update date Mar 03, 2015
Contact name Maria Giulia Bacalini
E-mail(s) mugiu17@hotmail.com
Phone 00390512094748
Organization name IRCCS Istituto delle Scienze Neurologiche di Bologna
Department Brain Aging Laboratory
Street address Via Altura 3
City Bologna
ZIP/Postal code 40139
Country Italy
 
Platform ID GPL13534
Series (1)
GSE52588 Identification of a DNA methylation signature in blood from subjects affected by Down syndrome

Data table header descriptions
ID_REF
VALUE Average Beta
1019 Detection Pval

Data table
ID_REF VALUE 1019 Detection Pval
cg00000165 0.1762731 0
cg00000363 0.4073784 0
cg00000948 0.8553537 0
cg00001249 0.7546047 0
cg00001261 0.4914981 0
cg00001269 0.8466782 0
cg00001593 0.8750778 0
cg00001747 0.08540456 0
cg00001809 0.6573777 0
cg00001930 0.8282682 0
cg00002190 0.7072632 0
cg00002449 0.8159981 0
cg00002769 0.8791896 0
cg00002837 0.4491873 0
cg00003181 0.8232534 0
cg00003305 0.1265823 0
cg00003578 0.5669335 0
cg00003722 0.9211946 0
cg00003900 0.3718714 0
cg00003969 0.8150889 0

Total number of rows: 485577

Table truncated, full table size 11000 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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