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Sample GSM1270040 Query DataSets for GSM1270040
Status Public on Dec 28, 2013
Title Genome-wide mUPD
Sample type genomic
Source name Leukocytes
Organism Homo sapiens
Characteristics gender: female
health state: Silver Russell-like
tissue: Leukocytes
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 5806361009_R04C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.5633059
cg00000108 0.9444498
cg00000109 0.9370625
cg00000165 0.1844679
cg00000236 0.7898506
cg00000289 0.7772747
cg00000292 0.8254177
cg00000321 0.2735455
cg00000363 0.4061934
cg00000622 0.008817855
cg00000658 0.8462179
cg00000714 0.2270913
cg00000721 0.9381557
cg00000734 0.09588806
cg00000769 0.02716046
cg00000807 0.8269027
cg00000884 0.8871433
cg00000905 0.08363218
cg00000924 0.7992563
cg00000948 0.9074758

Total number of rows: 485577

Table truncated, full table size 10002 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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