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Sample GSM1270039 Query DataSets for GSM1270039
Status Public on Dec 28, 2013
Title Genome-wide pUPD4
Sample type genomic
Source name Leukocytes
Organism Homo sapiens
Characteristics gender: female
health state: Beckwith Wiedemann-like
tissue: Leukocytes
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 5806361009_R04C01
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.5882686
cg00000108 0.9467082
cg00000109 0.9370829
cg00000165 0.1813659
cg00000236 0.7691928
cg00000289 0.7902413
cg00000292 0.8638473
cg00000321 0.5156294
cg00000363 0.3891509
cg00000622 0.006364163
cg00000658 0.8128181
cg00000714 0.2165812
cg00000721 0.9399934
cg00000734 0.09895208
cg00000769 0.03645477
cg00000807 0.8378048
cg00000884 0.916339
cg00000905 0.09395886
cg00000924 0.1100511
cg00000948 0.9162285

Total number of rows: 485577

Table truncated, full table size 10003 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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