GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1270038 Query DataSets for GSM1270038
Status Public on Dec 28, 2013
Title Genome-wide pUPD3
Sample type genomic
Source name Leukocytes
Organism Homo sapiens
Characteristics gender: female
health state: Beckwith Wiedemann-like
tissue: Leukocytes
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 5806361009_R03C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.7163427
cg00000108 0.9501238
cg00000109 0.9135425
cg00000165 0.1788857
cg00000236 0.8465727
cg00000289 0.8090928
cg00000292 0.8652881
cg00000321 0.3948883
cg00000363 0.3184164
cg00000622 0.006210235
cg00000658 0.8441297
cg00000714 0.270463
cg00000721 0.9441966
cg00000734 0.08605206
cg00000769 0.05437085
cg00000807 0.8720837
cg00000884 0.9050385
cg00000905 0.09196186
cg00000924 0.1747082
cg00000948 0.9037635

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap