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Sample GSM1270035 Query DataSets for GSM1270035
Status Public on Dec 28, 2013
Title LLC9P/phESC-6
Sample type genomic
Source name parthenogenetic activated oocytes
Organism Homo sapiens
Characteristics gender: female
health state: activated metaphase-2 oocyte
tissue: parthenogenetic activated oocytes
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 7878191157_R04C01
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.580449
cg00000108 0.9052287
cg00000109 0.8532913
cg00000165 0.08562435
cg00000236 0.7125511
cg00000289 0.6545797
cg00000292 0.7915661
cg00000321 0.2430532
cg00000363 0.125989
cg00000622 0.005690433
cg00000658 0.70812
cg00000714 0.2981284
cg00000721 0.8448166
cg00000734 0.07881037
cg00000769 0.06845018
cg00000807 0.6524218
cg00000884 0.7467576
cg00000905 0.1257177
cg00000924 0.8449723
cg00000948 0.7262788

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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