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Sample GSM1270033 Query DataSets for GSM1270033
Status Public on Dec 28, 2013
Title LLC7P/phESC-4
Sample type genomic
Source name parthenogenetic activated oocytes
Organism Homo sapiens
Characteristics gender: female
health state: activated metaphase-2 oocyte
tissue: parthenogenetic activated oocytes
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 7878191101_R01C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.6174486
cg00000108 0.9134322
cg00000109 0.8601026
cg00000165 0.08836354
cg00000236 0.7703174
cg00000289 0.6705252
cg00000292 0.824666
cg00000321 0.2576629
cg00000363 0.1570619
cg00000622 0.01662089
cg00000658 0.7241495
cg00000714 0.3575332
cg00000721 0.8577891
cg00000734 0.07673745
cg00000769 0.06513675
cg00000807 0.7264519
cg00000884 0.7495087
cg00000905 0.120672
cg00000924 0.8196716
cg00000948 0.7757815

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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