|
Status |
Public on Dec 28, 2013 |
Title |
LLC6P/phESC-3 |
Sample type |
genomic |
|
|
Source name |
parthenogenetic activated oocytes
|
Organism |
Homo sapiens |
Characteristics |
gender: female health state: activated metaphase-2 oocyte tissue: parthenogenetic activated oocytes
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina labelling protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
Description |
7973201042_R03C02
|
Data processing |
Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
|
|
|
Submission date |
Nov 20, 2013 |
Last update date |
Dec 28, 2013 |
Contact name |
Manel Esteller |
Organization name |
IDIBELL
|
Department |
PEBC
|
Lab |
Cancer Epigenetics
|
Street address |
Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
|
City |
L'Hospitalet de Llobregat |
State/province |
Barcelona |
ZIP/Postal code |
08908 |
Country |
Spain |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE52576 |
Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip] |
GSE52578 |
Genome-wide parent-of-origin DNA methylation analysis |
|