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Sample GSM1270032 Query DataSets for GSM1270032
Status Public on Dec 28, 2013
Title LLC6P/phESC-3
Sample type genomic
Source name parthenogenetic activated oocytes
Organism Homo sapiens
Characteristics gender: female
health state: activated metaphase-2 oocyte
tissue: parthenogenetic activated oocytes
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 7973201042_R03C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.6227085
cg00000108 0.9134399
cg00000109 0.8878783
cg00000165 0.1130528
cg00000236 0.8346775
cg00000289 0.7207863
cg00000292 0.800679
cg00000321 0.261324
cg00000363 0.2292683
cg00000622 0.01771154
cg00000658 0.7380933
cg00000714 0.2593039
cg00000721 0.8539082
cg00000734 0.06998197
cg00000769 0.08680428
cg00000807 0.7512352
cg00000884 0.7683716
cg00000905 0.1126554
cg00000924 0.8750911
cg00000948 0.8257677

Total number of rows: 485577

Table truncated, full table size 9995 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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