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Sample GSM1270030 Query DataSets for GSM1270030
Status Public on Dec 28, 2013
Title SHEF 6
Sample type genomic
Source name human embryonic stem cells
Organism Homo sapiens
Characteristics gender: female
health state: isolated from blastocyst
tissue: human embryonic stem cells
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 6055424005_R04C01
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.7549741
cg00000108 0.923924
cg00000109 0.9390561
cg00000165 0.09582505
cg00000236 0.8398876
cg00000289 0.6177841
cg00000292 0.8707605
cg00000321 0.1099421
cg00000363 0.09500157
cg00000622 0.008465876
cg00000658 0.8334415
cg00000714 0.2265429
cg00000721 0.8812978
cg00000734 0.07243975
cg00000769 0.05329846
cg00000807 0.7648352
cg00000884 0.8255828
cg00000905 0.1238708
cg00000924 0.4740727
cg00000948 0.8020377

Total number of rows: 485577

Table truncated, full table size 10020 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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