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Sample GSM1270029 Query DataSets for GSM1270029
Status Public on Dec 28, 2013
Title SHEF 5
Sample type genomic
Source name human embryonic stem cells
Organism Homo sapiens
Characteristics gender: NA
health state: isolated from blastocyst
tissue: human embryonic stem cells
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 7796806091_R01C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.7740562
cg00000108 0.9474332
cg00000109 0.824872
cg00000165 0.0799168
cg00000236 0.8408353
cg00000289 0.5598344
cg00000292 0.8095278
cg00000321 0.1686407
cg00000363 0.1171108
cg00000622 0.0130309
cg00000658 0.7853079
cg00000714 0.1847865
cg00000721 0.8638892
cg00000734 0.08825146
cg00000769 0.05381674
cg00000807 0.7461689
cg00000884 0.784534
cg00000905 0.1028027
cg00000924 0.5235044
cg00000948 0.7851083

Total number of rows: 485577

Table truncated, full table size 10049 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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