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Sample GSM1270028 Query DataSets for GSM1270028
Status Public on Dec 28, 2013
Title SHEF 3
Sample type genomic
Source name human embryonic stem cells
Organism Homo sapiens
Characteristics gender: male
health state: isolated from blastocyst
tissue: human embryonic stem cells
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 7796806085_R04C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.8386242
cg00000108 0.9281793
cg00000109 0.8336653
cg00000165 0.1421217
cg00000236 0.8535783
cg00000289 0.6402088
cg00000292 0.8330233
cg00000321 0.25236
cg00000363 0.1396337
cg00000622 0.02090285
cg00000658 0.7911181
cg00000714 0.2892456
cg00000721 0.8846626
cg00000734 0.08567584
cg00000769 0.07217316
cg00000807 0.7835621
cg00000884 0.792107
cg00000905 0.124147
cg00000924 0.5554668
cg00000948 0.7916268

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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