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Sample GSM1270027 Query DataSets for GSM1270027
Status Public on Dec 28, 2013
Title Sperm 2
Sample type genomic
Source name Sperm
Organism Homo sapiens
Characteristics gender: male
health state: Health tissue
tissue: Sperm
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 7796806086_R04C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.1503075
cg00000108 0.945889
cg00000109 0.8506991
cg00000165 0.122389
cg00000236 0.8714431
cg00000289 0.1856157
cg00000292 0.2266287
cg00000321 0.1464236
cg00000363 0.1567263
cg00000622 0.01297295
cg00000658 0.6741077
cg00000714 0.1058928
cg00000721 0.4938231
cg00000734 0.1062589
cg00000769 0.04675259
cg00000807 0.8495598
cg00000884 0.8895313
cg00000905 0.7116063
cg00000924 0.2514489
cg00000948 0.4713497

Total number of rows: 485577

Table truncated, full table size 10065 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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