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Sample GSM1270023 Query DataSets for GSM1270023
Status Public on Dec 28, 2013
Title Placenta (PL3)
Sample type genomic
Source name Term placenta- fetal side
Organism Homo sapiens
Characteristics gender: male
health state: Term Placenta 39.3 weeks
tissue: Term placenta- fetal side
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 6042324162_R02C01
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.06314959
cg00000108 0.9253047
cg00000109 0.8946294
cg00000165 0.5725272
cg00000236 0.796493
cg00000289 0.6883995
cg00000292 0.6402909
cg00000321 0.5229808
cg00000363 0.3534803
cg00000622 0.00887326
cg00000658 0.8359967
cg00000714 0.2695307
cg00000721 0.9099754
cg00000734 0.07132244
cg00000769 0.09738406
cg00000807 0.3799073
cg00000884 0.7056672
cg00000905 0.04983303
cg00000924 0.5219951
cg00000948 0.6307946

Total number of rows: 485577

Table truncated, full table size 10007 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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