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Sample GSM1270022 Query DataSets for GSM1270022
Status Public on Dec 28, 2013
Title Placenta (PL1)
Sample type genomic
Source name Term placenta- fetal side
Organism Homo sapiens
Characteristics gender: female
health state: Term Placenta 40.6 weeks
tissue: Term placenta- fetal side
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 6042324145_R06C01
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.06053327
cg00000108 0.9383166
cg00000109 0.9323454
cg00000165 0.6314664
cg00000236 0.8548268
cg00000289 0.7396838
cg00000292 0.6664115
cg00000321 0.5888618
cg00000363 0.2555159
cg00000622 0.00
cg00000658 0.8686048
cg00000714 0.2794338
cg00000721 0.9224931
cg00000734 0.08306549
cg00000769 0.03909907
cg00000807 0.3426239
cg00000884 0.6346057
cg00000905 0.07124279
cg00000924 0.5531794
cg00000948 0.6361126

Total number of rows: 485577

Table truncated, full table size 9986 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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