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Sample GSM1270019 Query DataSets for GSM1270019
Status Public on Dec 28, 2013
Title Androgenetic hydatidiform mole 2
Sample type genomic
Source name Hydatidiform mole
Organism Homo sapiens
Characteristics gender: female
health state: Hydropic molar tissue
tissue: Hydatidiform mole
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 5806361012_R01C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.1201369
cg00000108 0.8985469
cg00000109 0.9030076
cg00000165 0.5516593
cg00000236 0.8518505
cg00000289 0.7765533
cg00000292 0.7081965
cg00000321 0.4397783
cg00000363 0.4428474
cg00000622 0.0008066866
cg00000658 0.8404767
cg00000714 0.1527275
cg00000721 0.8667367
cg00000734 0.09630869
cg00000769 0.03801417
cg00000807 0.4305808
cg00000884 0.4517545
cg00000905 0.07498953
cg00000924 0.09831223
cg00000948 0.693328

Total number of rows: 485577

Table truncated, full table size 9978 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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