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Sample GSM1270018 Query DataSets for GSM1270018
Status Public on Dec 28, 2013
Title Androgenetic hydatidiform mole 1
Sample type genomic
Source name Hydatidiform mole
Organism Homo sapiens
Characteristics gender: female
health state: Hydropic molar tissue
tissue: Hydatidiform mole
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 5806361012_R01C01
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.06705267
cg00000108 0.8900204
cg00000109 0.8897559
cg00000165 0.6895517
cg00000236 0.815697
cg00000289 0.7222615
cg00000292 0.7213984
cg00000321 0.7730047
cg00000363 0.701125
cg00000622 0.01024234
cg00000658 0.8433621
cg00000714 0.140708
cg00000721 0.9015805
cg00000734 0.08488483
cg00000769 0.03332326
cg00000807 0.3459305
cg00000884 0.62496
cg00000905 0.09611474
cg00000924 0.08309607
cg00000948 0.8153082

Total number of rows: 485577

Table truncated, full table size 9999 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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