GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1270013 Query DataSets for GSM1270013
Status Public on Dec 28, 2013
Title Brain 2
Sample type genomic
Source name Adult Brain
Organism Homo sapiens
Characteristics gender: female
health state: Health tissue
tissue: Adult Brain
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description 5806361009_R06C02
Data processing Genome Studio V2011.2; The 'complete_data.txt' contains 5 columns of data per each sample; AVG_Beta, SignalA (nonmethylated), SignalB (methylated), Dectection Pval, Intensity.
Submission date Nov 20, 2013
Last update date Dec 28, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE52576 Genome-wide parent-of-origin DNA methylation analysis [Methylation450 BeadChip]
GSE52578 Genome-wide parent-of-origin DNA methylation analysis

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.7857954
cg00000108 0.9301972
cg00000109 0.8401566
cg00000165 0.1034613
cg00000236 0.9039466
cg00000289 0.7731858
cg00000292 0.6529058
cg00000321 0.4619683
cg00000363 0.1196133
cg00000622 0.01760937
cg00000658 0.8452632
cg00000714 0.1094765
cg00000721 0.9407375
cg00000734 0.07830669
cg00000769 0.04060942
cg00000807 0.8855294
cg00000884 0.8824399
cg00000905 0.06700332
cg00000924 0.4914403
cg00000948 0.9516351

Total number of rows: 485577

Table truncated, full table size 10013 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap