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Sample GSM1259317 Query DataSets for GSM1259317
Status Public on Jan 21, 2014
Title Epi_Cast_Testo24_rep3
Sample type RNA
Source name adult male
Organism Mus musculus
Characteristics tissue: caput epididymis
Treatment protocol Tissues were harvested from adult castrated male mice 12 or 24 hours after single testosterone- or vehicle-injection.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3, 24-h testosterone-treatment
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
Submission date Nov 05, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
VALUE quantile normalized
9323675033_F.Detection Pval

Data table
ID_REF VALUE 9323675033_F.Detection Pval
ILMN_2417611 -1.3 0.49786
ILMN_2762289 8.2 0.09402
ILMN_2896528 3855.2 0.00000
ILMN_2721178 1005.9 0.00000
ILMN_2458837 -9.1 0.93697
ILMN_3033922 1983.7 0.00000
ILMN_3092673 7042.2 0.00000
ILMN_1230777 4593.6 0.00000
ILMN_1246069 1300.9 0.00000
ILMN_1232042 -8.5 0.91774
ILMN_1243193 1603.2 0.00000
ILMN_2524361 -3.0 0.60470
ILMN_1242440 -2.4 0.56410
ILMN_1233188 313.8 0.00000
ILMN_2543688 5737.6 0.00000
ILMN_1259789 14.7 0.02778
ILMN_2816356 31.4 0.00000
ILMN_1224596 63.7 0.00000
ILMN_1233643 2.4 0.27244
ILMN_2808939 1143.1 0.00000

Total number of rows: 45281

Table truncated, full table size 1154 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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