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Sample GSM1259311 Query DataSets for GSM1259311
Status Public on Jan 21, 2014
Title Epi_Cast_Vehicle12_rep3
Sample type RNA
 
Source name adult male
Organism Mus musculus
Characteristics tissue: caput epididymis
Treatment protocol Tissues were harvested from adult castrated male mice 12 or 24 hours after single testosterone- or vehicle-injection.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3, 12-h vehicle-treatment
9249051010_E
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
 
Submission date Nov 05, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
E-mail(s) olli.janne@helsinki.fi
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
 
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
ID_REF
VALUE quantile normalized
9249051010_E.Detection Pval

Data table
ID_REF VALUE 9249051010_E.Detection Pval
ILMN_2417611 -4.2 0.67949
ILMN_2762289 -4.1 0.67628
ILMN_2896528 2890.8 0.00000
ILMN_2721178 650.1 0.00000
ILMN_2458837 -2.1 0.52137
ILMN_3033922 1458.5 0.00000
ILMN_3092673 6794.5 0.00000
ILMN_1230777 5182.5 0.00000
ILMN_1246069 1043.6 0.00000
ILMN_1232042 -5.9 0.79487
ILMN_1243193 849.4 0.00000
ILMN_2524361 -5.1 0.74145
ILMN_1242440 0.1 0.35684
ILMN_1233188 344.5 0.00000
ILMN_2543688 6347.2 0.00000
ILMN_1259789 13.9 0.02671
ILMN_2816356 27.3 0.00214
ILMN_1224596 65.1 0.00000
ILMN_1233643 2.7 0.21581
ILMN_2808939 648.6 0.00000

Total number of rows: 45281

Table truncated, full table size 1153 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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