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Sample GSM1259310 Query DataSets for GSM1259310
Status Public on Jan 21, 2014
Title Epi_Cast_Vehicle12_rep2
Sample type RNA
Source name adult male
Organism Mus musculus
Characteristics tissue: caput epididymis
Treatment protocol Tissues were harvested from adult castrated male mice 12 or 24 hours after single testosterone- or vehicle-injection.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2, 12-h vehicle-treatment
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
Submission date Nov 05, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
VALUE quantile normalized
9323675032_F.Detection Pval

Data table
ID_REF VALUE 9323675032_F.Detection Pval
ILMN_2417611 -2.4 0.55662
ILMN_2762289 4.6 0.18483
ILMN_2896528 4254.3 0.00000
ILMN_2721178 846.1 0.00000
ILMN_2458837 -7.7 0.91453
ILMN_3033922 2185.6 0.00000
ILMN_3092673 7212.8 0.00000
ILMN_1230777 5755.0 0.00000
ILMN_1246069 1304.2 0.00000
ILMN_1232042 -3.7 0.66346
ILMN_1243193 892.4 0.00000
ILMN_2524361 -9.2 0.95513
ILMN_1242440 1.6 0.30128
ILMN_1233188 383.0 0.00000
ILMN_2543688 4584.7 0.00000
ILMN_1259789 21.2 0.00534
ILMN_2816356 29.8 0.00000
ILMN_1224596 60.0 0.00000
ILMN_1233643 0.5 0.36004
ILMN_2808939 931.3 0.00000

Total number of rows: 45281

Table truncated, full table size 1153 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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