GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1259309 Query DataSets for GSM1259309
Status Public on Jan 21, 2014
Title Epi_Cast_Vehicle12_rep1
Sample type RNA
Source name adult male
Organism Mus musculus
Characteristics tissue: caput epididymis
Treatment protocol Tissues were harvested from adult castrated male mice 12 or 24 hours after single testosterone- or vehicle-injection.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1, 12-h vehicle-treatment
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
Submission date Nov 05, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
VALUE quantile normalized
9323675032_E.Detection Pval

Data table
ID_REF VALUE 9323675032_E.Detection Pval
ILMN_2417611 -7.4 0.87927
ILMN_2762289 -2.9 0.58120
ILMN_2896528 4174.5 0.00000
ILMN_2721178 990.5 0.00000
ILMN_2458837 -12.0 0.98825
ILMN_3033922 1630.9 0.00000
ILMN_3092673 6642.3 0.00000
ILMN_1230777 4815.6 0.00000
ILMN_1246069 1295.0 0.00000
ILMN_1232042 -1.5 0.48504
ILMN_1243193 1019.7 0.00000
ILMN_2524361 6.0 0.14103
ILMN_1242440 -2.2 0.52885
ILMN_1233188 326.4 0.00000
ILMN_2543688 3403.9 0.00000
ILMN_1259789 21.8 0.00748
ILMN_2816356 30.5 0.00107
ILMN_1224596 72.3 0.00000
ILMN_1233643 -2.6 0.56197
ILMN_2808939 870.2 0.00000

Total number of rows: 45281

Table truncated, full table size 1153 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap