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Sample GSM1252038 Query DataSets for GSM1252038
Status Public on Oct 29, 2013
Title bone marrow_control_rep3 [G]
Sample type genomic
Source name control3
Organism Homo sapiens
Characteristics gender: male
tissue: bone marrow
disease state: normal
age: 48y
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purifiedusing QIAamp DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal bone marrow
Data processing BeadStudio software 2011.1
Submission date Oct 28, 2013
Last update date Oct 29, 2013
Contact name xiaoqin wang
Organization name Huashan hospital
Street address 12 wulumuqi road central
City Shanghai
ZIP/Postal code 200040
Country China
Platform ID GPL13534
Series (2)
GSE51758 Genome-wide profiling of DNA methylation and expression identifies CIMP in myelodysplastic syndrome [Illumina]
GSE51759 Genome-wide profiling of DNA methylation and expression identifies CIMP in myelodysplastic syndrome

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.4968994 0.00E+00
cg00000108 0.9184099 0.00E+00
cg00000109 0.8687629 0.00E+00
cg00000165 0.2301086 0.00E+00
cg00000236 0.7706751 0.00E+00
cg00000289 0.6530051 0.00E+00
cg00000292 0.8388665 0.00E+00
cg00000321 0.00E+00
cg00000363 0.3901781 0.00E+00
cg00000622 0.01041826 0.00E+00
cg00000658 0.7975562 0.00E+00
cg00000714 0.221527 0.00E+00
cg00000721 0.9095008 0.00E+00
cg00000734 0.07206639 0.00E+00
cg00000769 0.06093705 0.00E+00
cg00000807 0.7965351 0.00E+00
cg00000884 0.8755953 0.00E+00
cg00000905 0.08583505 0.00E+00
cg00000924 0.6476744 0.00E+00
cg00000948 0.84038 0.00E+00

Total number of rows: 485577

Table truncated, full table size 14310 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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