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Sample GSM1250916 Query DataSets for GSM1250916
Status Public on Oct 26, 2013
Title PSM03_LN4D6 cells
Sample type RNA
 
Source name LN4D6 cells
Organism Rattus norvegicus
Characteristics cell line: LN4D6
cell type: rat mammary tumor cells
tansfected with: none
Growth protocol Cells were grown in 5% CO2 at 37C
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Qiagen RNA extraction kit according to manufacturers instructions.
Label Biotin
Label protocol Biotin labelling was prepared using the 3' IVT Express Kit according to manufacturers instructions.
 
Hybridization protocol cRNA was hybridized and stained using the Genechip hybridization, stain and wash kit according to manufacturers instructions.
Scan protocol Gene chips were scanned using Genechip Scanner 3000 7G
Description Gene expression data from LN4D6 cells
Data processing The data was analyzed with Partek Genomics Suite v6.6 using RMA (data in log2)
 
Submission date Oct 25, 2013
Last update date Oct 29, 2013
Contact name Deborah Anderson
E-mail(s) deborah.anderson@saskcancer.ca
Phone 13069667038
Organization name University of Saskatchewan
Street address 107 Wiggins Road
City Saskatoon
State/province Saskatchewan
ZIP/Postal code S7N 5E5
Country Canada
 
Platform ID GPL1355
Series (2)
GSE51708 Effects of CREB3L1 on gene expression
GSE51857 CREB3L1 is a metastasis suppressor that represses expression of genes regulating metastasis, invasion and angiogenesis

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
1367452_at 15.2885
1367453_at 12.5553
1367454_at 11.5183
1367455_at 13.3333
1367456_at 14.8326
1367457_at 13.1312
1367458_at 8.09837
1367459_at 14.3374
1367460_at 14.2526
1367461_at 12.0248
1367462_at 11.5501
1367463_at 13.677
1367464_at 12.4563
1367465_at 11.7576
1367466_at 11.4062
1367467_at 12.8626
1367468_at 9.62457
1367469_at 15.2055
1367470_at 11.6869
1367471_at 12.3289

Total number of rows: 31099

Table truncated, full table size 577 Kbytes.




Supplementary file Size Download File type/resource
GSM1250916_AFFY1443.CEL.gz 3.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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