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Sample GSM1233426 Query DataSets for GSM1233426
Status Public on Sep 12, 2016
Title benzene poisoning group, biological rep2
Sample type genomic
Source name benzene poisoning patient 2
Organism Homo sapiens
Characteristics stress: benzene poisoning
cell type: peripheral blood mononuclear cells
Treatment protocol All blood samples from each subject were centrifuged and subjected to DNA extraction.
Growth protocol Peripheral blood samples were obtained during physical exam of workers.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared using DNA extraction kit (Qiagen) according to manufacturer's instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using iScan Reader using standard recommended Illumina scanner setting
Description DNA Methylation profiles from benzene poisoning patient 2
SentrixBarcode: 7973201015
SentrixPosition: R05C02
Sample_ID: A2
Well: A11
Data processing GenomeStudio V2011.1; methylation module 1.9.0
Submission date Sep 18, 2013
Last update date Sep 12, 2016
Contact name ai aa gao
Organization name School of Public Health, Capital Medical University
Street address NO10, Xi tou tiao, Youanmen,Fengtai District
City beijing
ZIP/Postal code 100069
Country China
Platform ID GPL13534
Series (1)
GSE50967 DNA Methylation profiles of benzene hematotoxicity

Data table header descriptions
VALUE Average Beta
A2.Detection Pval

Data table
ID_REF VALUE A2.Detection Pval
cg00000029 0.7276114 0.00
cg00000108 0.9107536 0.00
cg00000109 0.7718791 0.00
cg00000165 0.3657849 0.00
cg00000236 0.8111929 0.00
cg00000289 0.6999268 0.00
cg00000292 0.8196637 0.00
cg00000321 0.3256264 0.00
cg00000363 0.3405749 0.00
cg00000622 0.01072471 0.00
cg00000658 0.8310937 0.00
cg00000714 0.1891852 0.00
cg00000721 0.8904738 0.00
cg00000734 0.1540577 0.00
cg00000769 0.08951057 0.00
cg00000807 0.7283111 0.00
cg00000884 0.8455316 0.00
cg00000905 0.08960298 0.00
cg00000924 0.4809632 0.00
cg00000948 0.8478642 0.00

Total number of rows: 485577

Table truncated, full table size 12373 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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