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Sample GSM1232144 Query DataSets for GSM1232144
Status Public on Jan 01, 2017
Title bone marrow from NM21696
Sample type genomic
 
Channel 1
Source name bone marrow
Organism Homo sapiens
Characteristics gender: M
who: RAEB-1
tissue: bone marrow
cell type: MDS tumor cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from whole bone marrow, whole peripheral blood or CD3 lymphocytes isolated from peripheral blood at diagnosis. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer and agarose gel electrophoresis.
Label Cy5
Label protocol Protocol Version 6.2.1, Feb 2010, Agilent. Same gender reference/control DNA was purchased from Kreatech as pool.
 
Channel 2
Source name control DNA
Organism Homo sapiens
Characteristics sample type: gender-matched, pooled reference/control DNA (Kreatech)
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from whole bone marrow, whole peripheral blood or CD3 lymphocytes isolated from peripheral blood at diagnosis. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer and agarose gel electrophoresis.
Label Cy3
Label protocol Protocol Version 6.2.1, Feb 2010, Agilent. Same gender reference/control DNA was purchased from Kreatech as pool.
 
 
Hybridization protocol Protocol Version 6.2.1, Feb 2010, Agilent.
Scan protocol Scanned on an Agilent G2505C scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description Sample name: NM21696
Data processing Agilent Feature Extraction Software (version 10.7.1.1) was used for background subtraction and LOWESS normalization.
 
Submission date Sep 16, 2013
Last update date Jan 01, 2017
Contact name Brigitte Royer-Pokora
E-mail(s) royer@uni-duesseldorf.de
Organization name Institute of Human Genetics and Anthropology, Heinrich-Heine-University Duesseldorf
Street address Universitätsstr. 1
City Duesseldorf
ZIP/Postal code 40225
Country Germany
 
Platform ID GPL10123
Series (1)
GSE50897 Bioinformatic evaluation and comparison of parallel aSNP and aCGH analyses of myelodysplastic syndromes patients with normal karyotype

Data table header descriptions
ID_REF
VALUE normalized log10 ratio (Cy5/Cy3) representing test/reference

Data table
ID_REF VALUE
1 -2.324067511e-002
2 0.000000000e+000
3 0.000000000e+000
4 0.000000000e+000
5 3.790419843e-001
6 5.562980289e-001
7 0.000000000e+000
8 0.000000000e+000
9 4.265734813e-001
10 2.152623374e-001
11 0.000000000e+000
12 0.000000000e+000
13 0.000000000e+000
14 3.391176718e-001
15 0.000000000e+000
16 4.190079470e-001
17 0.000000000e+000
18 0.000000000e+000
19 0.000000000e+000
20 0.000000000e+000

Total number of rows: 180880

Table truncated, full table size 4219 Kbytes.




Supplementary file Size Download File type/resource
GSM1232144_NM21696.txt.gz 50.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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