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Sample GSM1220295 Query DataSets for GSM1220295
Status Public on Dec 12, 2013
Title Reference Epigenome: ChIP-Seq Analysis of H3K4me3 in Human Psoas Muscle Tissue; renlab.H3K4me3.STL003PO.02.01
Sample type SRA
Source name Psoas Muscle tissue; renlab.H3K4me3.STL003PO.02.01
Organism Homo sapiens
Characteristics sra sample accession: SRS306621
disease: None
biomaterial_provider: Shin Lin, Stanford University
biomaterial_type: Primary Tissue
tissue_type: Psoas Muscle
tissue_depot: N/A
collection_method: Autopsy
donor_id: STL003
donor_age: 34
donor_health_status: polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)
donor_sex: Male
donor_ethnicity: Caucasian
experiment_type: Histone H3K4me3
extraction_protocol: See
extraction_protocol_type_of_sonicator: Biorupter
extraction_protocol_sonication_cycles: 80
chip_protocol: See
chip_protocol_chromatin_amount: 500 micrograms
chip_protocol_bead_type: magnetic anti-rabbit
chip_protocol_bead_amount: 33,500,000
chip_protocol_antibody_amount: 5 micrograms
chip_antibody: H3K4me3
chip_antibody_provider: Millipore
chip_antibody_catalog: 04-745
chip_antibody_lot: 2197316
Extracted molecule genomic DNA
Extraction protocol Library construction protocol: See
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
Description sample_term_id: UBERON_0008450
assay_term_id: OBI_0000716
nucleic_acid_term_id: SO_0000352
Design description: ChIP-Seq Analysis of H3K4me3 in Human Psoas Muscle Tissue. Sequencing was done on the Illumina HiSeq 2500 platform.
Library name: CY335
EDACC Genboree Experiment Page:
EDACC Genboree Sample Page:
For data usage terms and conditions, please refer to:
Data processing Various levels of processed data files will be made available as this project proceeds.
Submission date Aug 30, 2013
Last update date May 15, 2019
Contact name UCSD AND SALK
Organization name University of California, San Diego
Street address Health Sciences Drive
City La Jolla
State/province CA
ZIP/Postal code 92092
Country USA
Platform ID GPL16791
Series (1)
GSE16256 UCSD Human Reference Epigenome Mapping Project
SRA SRX342282
BioSample SAMN00847540

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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