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Sample GSM1215455 Query DataSets for GSM1215455
Status Public on Feb 26, 2014
Title Aorta_thoracic_SJ600-5
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Aorta_thoracic
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.332998676
cg00000108 0.885922611
cg00000109 0.608576112
cg00000165 0.190146592
cg00000236 0.770587856
cg00000289 0.752787565
cg00000292 0.633385816
cg00000321 0.426158228
cg00000363 0.237729532
cg00000622 0.009543286
cg00000658 0.808838502
cg00000714 0.145129918
cg00000721 0.914751869
cg00000734 0.069204525
cg00000769 0.061462152
cg00000807 0.798409246
cg00000884 0.903806912
cg00000905 0.0771659
cg00000924 0.535460312
cg00000948 0.891304215

Total number of rows: 485577

Table truncated, full table size 10773 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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