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Sample GSM1215443 Query DataSets for GSM1215443
Status Public on Feb 26, 2014
Title Bone_SJ600-5
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Bone
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.32889234
cg00000108 0.92130071
cg00000109 0.840847832
cg00000165 0.181387433
cg00000236 0.831715779
cg00000289 0.764973663
cg00000292 0.512642629
cg00000321 0.368065832
cg00000363 0.268683841
cg00000622 0.001953623
cg00000658 0.812029047
cg00000714 0.140493707
cg00000721 0.937227205
cg00000734 0.075936837
cg00000769 0.019761372
cg00000807 0.778609601
cg00000884 0.89142797
cg00000905 0.051364562
cg00000924 0.578696815
cg00000948 0.891416795

Total number of rows: 485577

Table truncated, full table size 10724 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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