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Sample GSM1215442 Query DataSets for GSM1215442
Status Public on Feb 26, 2014
Title Splenic_artery_SJ600-5
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Splenic_artery
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.350609476
cg00000108 0.954905006
cg00000109 0.636560408
cg00000165 0.14051708
cg00000236 0.727444165
cg00000289 0.604697795
cg00000292 0.595845056
cg00000321 0.374563561
cg00000363 0.207920191
cg00000622 0.005462491
cg00000658 0.804055303
cg00000714 0.115217797
cg00000721 0.942797203
cg00000734 0.077009014
cg00000769 0.052080641
cg00000807 0.725591691
cg00000884 0.879706157
cg00000905 0.063025986
cg00000924 0.515478479
cg00000948 0.898737532

Total number of rows: 485577

Table truncated, full table size 10774 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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