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Sample GSM1215440 Query DataSets for GSM1215440
Status Public on Feb 26, 2014
Title Adipose_abdominal_SJ600-5
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Adipose_abdominal
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.272696645
cg00000108 0.92835877
cg00000109 0.753610766
cg00000165 0.163758006
cg00000236 0.808036735
cg00000289 0.629325913
cg00000292 0.580776432
cg00000321 0.237474921
cg00000363 0.204977312
cg00000622 0.003039514
cg00000658 0.806762417
cg00000714 0.144935344
cg00000721 0.953910914
cg00000734 0.067848558
cg00000769 0.059376837
cg00000807 0.761526457
cg00000884 0.880955674
cg00000905 0.073278125
cg00000924 0.523705533
cg00000948 0.892371905

Total number of rows: 485577

Table truncated, full table size 10757 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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