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Sample GSM1215437 Query DataSets for GSM1215437
Status Public on Feb 26, 2014
Title Aorta_thoracic_KT538
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Aorta_thoracic
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.185024143
cg00000108 0.893597015
cg00000109 0.469262587
cg00000165 0.170730591
cg00000236 0.769571639
cg00000289 0.680512751
cg00000292 0.59504944
cg00000321 0.549143432
cg00000363 0.179613676
cg00000622 0.00868634
cg00000658 0.842225607
cg00000714 0.076691797
cg00000721 0.949600741
cg00000734 0.087625765
cg00000769 0.054711521
cg00000807 0.837298889
cg00000884 0.933083957
cg00000905 0.071973216
cg00000924 0.506387091
cg00000948 0.895333637

Total number of rows: 485577

Table truncated, full table size 10696 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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