GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1215436 Query DataSets for GSM1215436
Status Public on Feb 26, 2014
Title Aorta_abdominal_KT538
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Aorta_abdominal
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.304636993
cg00000108 0.877282291
cg00000109 0.556588275
cg00000165 0.170437929
cg00000236 0.805970186
cg00000289 0.659981597
cg00000292 0.615465572
cg00000321 0.445759902
cg00000363 0.178153732
cg00000622 0.006240781
cg00000658 0.830372471
cg00000714 0.111724347
cg00000721 0.948091033
cg00000734 0.073232583
cg00000769 0.050661413
cg00000807 0.831056977
cg00000884 0.893952813
cg00000905 0.06488449
cg00000924 0.505382964
cg00000948 0.885827203

Total number of rows: 485577

Table truncated, full table size 10663 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap