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Sample GSM1215429 Query DataSets for GSM1215429
Status Public on Feb 26, 2014
Title Coronary_artery_KT538
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Coronary_artery
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.253938497
cg00000108 0.933822159
cg00000109 0.707712653
cg00000165 0.20307757
cg00000236 0.792278632
cg00000289 0.67576595
cg00000292 0.678156545
cg00000321 0.319757722
cg00000363 0.264232208
cg00000622 0.014488238
cg00000658 0.80263112
cg00000714 0.156570903
cg00000721 0.900984736
cg00000734 0.09117338
cg00000769 0.061316256
cg00000807 0.75551259
cg00000884 0.890554189
cg00000905 0.059439076
cg00000924 0.531752181
cg00000948 0.875263279

Total number of rows: 485577

Table truncated, full table size 10758 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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