GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1215425 Query DataSets for GSM1215425
Status Public on Feb 26, 2014
Title Splenic_artery_KT538
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Splenic_artery
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.359914372
cg00000108 0.931999848
cg00000109 0.659031171
cg00000165 0.154594256
cg00000236 0.719242173
cg00000289 0.671711197
cg00000292 0.583844
cg00000321 0.36591332
cg00000363 0.21159344
cg00000622 0.003443823
cg00000658 0.803634692
cg00000714 0.108136058
cg00000721 0.953528731
cg00000734 0.095559982
cg00000769 0.048227826
cg00000807 0.780428245
cg00000884 0.925255724
cg00000905 0.058686449
cg00000924 0.535266016
cg00000948 0.904890047

Total number of rows: 485577

Table truncated, full table size 10651 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap