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Sample GSM1215424 Query DataSets for GSM1215424
Status Public on Feb 26, 2014
Title Adipose_subcutaenous_KT538
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Adipose_subcutaenous
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.203893905
cg00000108 0.919659852
cg00000109 0.720050854
cg00000165 0.165629402
cg00000236 0.783322377
cg00000289 0.548048762
cg00000292 0.574778339
cg00000321 0.206560971
cg00000363 0.194903058
cg00000622 0.006867406
cg00000658 0.82737683
cg00000714 0.126526529
cg00000721 0.925893397
cg00000734 0.091701402
cg00000769 0.041061453
cg00000807 0.749153907
cg00000884 0.889610515
cg00000905 0.058414766
cg00000924 0.517444741
cg00000948 0.895649712

Total number of rows: 485577

Table truncated, full table size 10757 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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